Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0749270.1a.2b with 2 members (RING-type E3 ubiquitin transferase)

Gnathostomata / Euteleostomi / Neopterygii / Teleostei / Clupeocephala / Euteleosteomorpha / Protacanthopterygii / Salmo

Completeness score: 1.00

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This HOG has 47 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0749270.1a.5c.1a	122	63	RING-type E3 ubiquitin transferase
2	HOG:E0749270.1a	100	132	RING-type E3 ubiquitin transferase
3	HOG:E0762557.3a.3a.2a	28	72	E3 ubiquitin-protein ligase ring2
4	HOG:E0749270.1a.5c	10	69	RING-type E3 ubiquitin transferase
5	HOG:E0762557.3b	8	23	E3 ubiquitin-protein ligase ring2
6	HOG:E0762557.3a.3a	8	79	E3 ubiquitin-protein ligase ring2
7	HOG:E0762557	7	314	E3 ubiquitin-protein ligase ring2
8	HOG:E0211903	6	27	RING-type domain-containing protein
9	HOG:E0749270.1b	4	2	RING-type E3 ubiquitin transferase
10	HOG:E0749270.1a.1b	4	2	RING-type E3 ubiquitin transferase
11	HOG:E0749270	4	136	RING-type E3 ubiquitin transferase
12	HOG:E0670880	4	6	Derived by automated computational analysis using gene prediction method Gnomon
13	HOG:E0314455.2a.3a.5b	4	27	RING-type domain-containing protein
14	HOG:E0762557.3b.6b	2	1	E3 ubiquitin-protein ligase ring2
15	HOG:E0762557.3b.5b	2	1	E3 ubiquitin-protein ligase ring2
16	HOG:E0762557.3b.5a	2	1	E3 ubiquitin-protein ligase ring2
17	HOG:E0762557.3b.4c	2	1	E3 ubiquitin-protein ligase ring2
18	HOG:E0762557.3a.3a.2a.10a	2	1	E3 ubiquitin-protein ligase ring2
19	HOG:E0749270.1a.5c.1b	2	1	RING-type E3 ubiquitin transferase
20	HOG:E0749270.1a.5c.1a.1b	2	1	RING-type E3 ubiquitin transferase
21	HOG:E0749270.1a.5c.1a.1a	2	1	RING-type E3 ubiquitin transferase
22	HOG:E0749270.1a.5a	2	1	RING-type E3 ubiquitin transferase
23	HOG:E0749270.1a.4b	2	1	RING-type E3 ubiquitin transferase
24	HOG:E0749270.1a.4a	2	1	RING-type E3 ubiquitin transferase
25	HOG:E0749270.1a.3b	2	1	RING-type E3 ubiquitin transferase

Showing 1 to 25 of 47 rows rows per page